PhD Theses
A partial list of PhD theses submitted by graduate students of the lab and other affiliated students. To include a thesis, please contact Limsoon Wong (wongls@comp.nus.edu.sg)

2005

  1. Xia Cao, "Approximate searching in genomic databases", PhD thesis submitted 2005, awarded 2005, National University of Singapore. (Supervisors: Beng Chin Ooi & Anthony Tung, ??? 2001--??? 2005) Email: xia.cao@gmail.com / First job: Research Fellow at Univ of Michigan (Pathology Dept) with Alexey Nesvizhskii

  2. Huiqing Liu, "Effective use of data mining technologies on biological and clinical data", PhD thesis submitted 2004, awarded 2005, National University of Singapore. (Supervisor: Limsoon Wong, January 2000--October 2004) DNAFSMiner Server / Email: liuhq@biomaps.rutgers.edu / First job: Postdoc at Univ of Georgia (Dept of Biochemistry and Molecular Biology) with Ying Xu / Last known position: Research Assistant Professor at BioMaPS Institute for Quantitative Biology

  3. Tiefei Liu, "Learning gene network using Bayesian network framework", PhD thesis submitted 2005, awarded 2005, National University of Singapore. (Supervisor: Wing-Kin Sung, Pei-lin Mao, ??? 2000--??? 2005) Email: dbsliutf@nus.edu.sg / First job: Postdoc at NUS (Dept of Biochemistry) with Maxey Chung

2006

  1. Zeyar Aung, "Computational analysis of 3D protein structures", PhD thesis submitted 2005, awarded 2006, National University of Singapore. (Supervisor: Kian Lee Tan, January 2001--October 2006) Email: azeyar@-2r.a-star.edu.sg / First job: Research Fellow at Institute for Infocomm Research (Knowledge Discovert Dept) with Jinyan Li

  2. Haiquan Li, "Efficient discovery of binding motif pairs from protein-protein interactions", PhD thesis submitted 2006, awarded 2006, National University of Singapore. (Supervisor: Jinyan Li, Wee Sun Lee, July 2002--July 2006) Email: hqli@noble.org / First job: Research Associate at Noble Foundation with Patrick Zhao

  3. Zhenqiang Tan, "Querying and mining in biological databases", PhD thesis submitted 2006, awarded 2006, National University of Singapore. (Supervisor: Anthony Tung, ??? 2001--January 2006) Email: tanzq@mozat.com / First job: COO at MOZAT

  4. Xin Xu, "Data mining techniques in gene expression data analysis", PhD thesis submitted 2006, awarded 2006, National University of Singapore. (Supervisor: Anthony Tung, ???--July 2006) Email: xu.xin@alumni.nus.edu.sg / First job: Postdoc at NUS (Dept of Biological Sciences) with Martti Tammi

2007

  1. Jin Chen, "Systematic assessment of protein interaction data using graph topology approaches", PhD thesis submitted 2007, awarded 2007, National University of Singapore. (Supervisors: Wynne Hsu, Mong Li Lee, & See-Kiong Ng, January 2002--February 2007) Email: chenjin@stanford.edu / First job: Postdoc at Stanford University (Dept of Plant Biology) with Sue Rhee

  2. Rajesh Chowdhary, "Modeling and recognition of histone promoters on genome-wide scale by Bayesian networks", PhD thesis submitted 2006, awarded 2007, National University of Singapore. (Supervisors: Vladimir Bajic & Limsoon Wong, January 2003--September 2006) Email: chowdhary@stat.harvard.edu / First job: Postdoc at Harvard University (Dept of Statistics) with Jun Liu / Last known position: Research assistant professor at Marshfield Clinic, WI

  3. Liping Ji, "Mining localized co-expressed gene patterns from microarray data", PhD thesis submitted 2007, awarded 2007, National University of Singapore. (Supervisor: Kian Lee Tan, July 2002--January 2007) Email: jiliping@stanford.edu / First job: Postdoc at Stanford University (Dept of Plant Biology) with Sue Rhee / Last known position: Assistant professor at Harbin Institute of Technology, China

  4. Judice Koh, "Correlation-based methods for biological data cleaning", PhD thesis submitted 2007, awarded 2007, National University of Singapore. (Supervisor: Mong Li Lee, July 2002--March 2007) Email: judice.koh@utoronto.ca / First job: Postdoc at University of Toronto (Terrence Donnelly Centre for Cellular and Biomolecular Research) with Charles Boone

2008

  1. Hon Nian Chua, "Graph-based methods for protein function prediction", PhD thesis submitted 2007, awarded 2008, National University of Singapore. (Supervisors: Limsoon Wong & Wing-Kin Sung, August 2003--July 2007) FSWeight V2.1 Software / PCP V1.0 Software / Email: hnchua@i2r.a-star.edu.sg / First job: Research Fellow at Institute for Infocomm Research (Knowledge Discovert Dept) with See-Kiong Ng

  2. Li Lin, "Efficient Mining of Haplotype Patterns for Disease Prediction", PhD thesis submitted 2007, awarded 2008, National University of Singapore. (Supervisor: Leong Tze Yun, July 2000--December 2007) Email: llin@unisim.edu.sg / First Job: Lecturer (SIM University, School of Business)

  3. Stanley Kwang Loong Ng, "Computational identification of novel microRNAs using intrinsic RNA folding measures", PhD thesis submitted 2008, awarded 2008, National University of Singapore. (Supervisor: Santosh Mishra & Limsoon Wong, January 2004--January 2008) Email: stanley_ng@immunol.a-star.edu.sg / First job: Research Fellow at Singapore Immunology Network with Ee Chee Ren

  4. Kang Ning, "Algorithms for peptide and PTM identification using tandem mass spectrometry", PhD thesis submitted 2007, awarded 2008, National University of Singapore. (Supervisor: Hon Wai Leong and Louxin Zhang, August 2003--November 2007) Email: albertnk@gmail.com / First job: Research Fellow in University of Michigan (Pathology Dept) with Alexey Nesvizhskii

  5. Geoffrey Koh, "Pathway Models Decomposition and Composition Techniques for Parameter Estimation", PhD thesis submitted 2007, awarded 2008, National University of Singapore. (Supervisor: P. S. Thiagarajan and David Hsu, January 2004--June 2008) Email: geoffkoh@yahoo.com.sg / First job: Research Fellow in Bioprocessing Technology Institute with Dong-Yup Lee

  6. Vijayaraghava Seshadri Sundararajan, "Progressive data mining: An exploration of using whole-dataset feature selection in building classifiers on three biological problems", PhD thesis submitted 2007, awarded 2008, National University of Singapore. (Supervisor: Limsoon Wong, January 2002--June 2007) Email: chanusuba@gmail.com / First job: Research Fellow at NUS (Dept of Preventive Dentistry) with Steven Hsu / Last known position: Research Fellow at SANBI with Vlad Bajic

  7. Vinsensius B. Vega, "Inferring regulatory signal from genomic data", PhD thesis submitted 2008, National University of Singapore. (Supervisors: Wing-Kin Sung, January 2004--October 2008; Philip Long, August 2001--December 2003). Email: vega@alum.comp.nus.edu.sg / First job: Research Scientist at Genome Institute of Singapore

  8. Edward Wijaya, "Integrative methods for discovering generic cis-regulatory motifs", PhD thesis submitted 2008, awarded 2008, National University of Singapore. (Supervisor: Wing-Kin Sung, August 2003--March 2008) Email: ewijaya@gmail.com / First job: Postdoc at AIST Japan (CBRC) with Paul Horton.

  9. Swee Seong Wong, "String matching and indexing with suffix data structures", PhD thesis submitted 2007, awarded 2008, National University of Singapore. (Supervisor: Wing-Kin Sung & Limsoon Wong, August 2003--August 2007) CPS Software / Email: wong_swee_seong@lilly.com / First job: Senior Associate Scientist at Lily Singapore Center for Drug Discovery

Lab Coordinator: Limsoon Wong / Last updated: 22 November 2008.