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books | book chapters |
journal papers | conference papers | patents


[for other research accomplishments, please also go to my Research page]

BOOKS

  1. X. Li, S.-K. Ng, and J. Wang (Eds.) (2014) "Biological Data Mining and its Applications in Healthcare", World Scientific, January 2014, 436 pages.

  2. X. Li and S.-K. Ng (Eds.) (2012) "Computational Knowledge Discovery for Bioinformatics Research", IGI Global, USA, June 2012, 463 pages.

  3. X. Li and S.-K. Ng (Eds.) (2009) "Biological Data Mining in Protein Interaction Networks", IGI Global, USA, May 2009, 419 pages.

  4. J. Arthur and S.-K. Ng (Eds.) (2008) "Genome Informatics 2008", Imperial College Press, London, December 2008, 252 pages.

  5. S.-K. Ng, H. Mamitsuka, and L. Wong (Eds.) (2007) "Genome Informatics 2007", Imperial College Press, London, December 2007, 199 pages.

BioDMBook-2014 KRBook-2012 PPIBook-2009 GIW-2008 GIW-2007

BOOK CHAPTERS

  1. H. Willy, W.-K. Sung and S.-K. Ng (2013) "Discovering Interacting Domains and Motifs in Protein-Protein Interactions", Chapter 2, pages 9-20, in Data Mining for Systems Biology (Methods in Molecular Biology Series, Vol. 939), H. Mamitsuka, C. DeLisi, and M. Kanehisa (Eds), Springer, January 2013.

  2. X. Li and S.-K. Ng (2008) "Positive Unlabeled Learning for Document Classification", in Encyclopedia of Data Warehousing and Mining (2nd Edition), pages 1552-1557, J. Wang (Ed), IGI Global, USA, August 2008.

  3. S.-K. Ng (2006) "Integrating Text Mining with Data Mining", Chapter 10, pages 247-266, in Text Mining for Biology and Biomedicine, B. Stapley, S. Ananiadou (Eds.), Artech House Books, London, January 2006.

  4. S.-K. Ng (2005) "Constructing Biological Networks of Protein-Protein Interactions", Chapter 7, pages 653-669, in Information Processing and Living Systems, V.B. Bajic, T.W. Tan (Eds.), World Scientific Publishing, June 2005.

  5. S.-K. Ng (2004) "Molecular Biology for the Practical Bioinformatician". in The Practical Bioinformatician, Chapter 1, pages 1-30, World Scientific Publishing, May 2004.

  6. S.H. Tan, S.-K. Ng (2004) "Discovering Protein-Protein Interactions". in The Practical Bioinformatician, Chapter 13, pages 293-318, World Scientific Publishing, May 2004.

Data Mining for Systems Biology Encyclopedia Data Warehousing and Mining Text Mining for Biology and Biomedicine Information Processing Systems Practical Bioinformatician

JOURNAL PAPERS

  1. A. T. Luu, H. S. Cheung, and S.-K. Ng (2016) "Utilizing Temporal Information for Taxonomy Construction", in Transactions of the Association for Computational Linguistics (TACL), Vol 4, p. 551-564, December 2016.

  2. Y. Hu, T. Hase, H. P. Li, S. Prabhakar, H. Kitano, S.-K. Ng, S. Ghosh, and L. Wee. (2016) "A Machine Learning Approach for the Identification of Key Markers involved in Brain Development from Single-cell Transcriptomic Data", in BMC Genomics, Vol 17 (Suppl 13), December 2016.

  3. G. Liu, H. Zhang, M. Feng, L. Wong, and S.-K. Ng (2015) "Supporting Exploratory Hypothesis Testing and Analysis", in the ACM Transactions on Knowledge Discovery from Data (TKDD), Volume 9 Issue 4, Article No. 31, June 2015 PDF.

  4. H. Han, X.-L. Li, S.-K. Ng, and J. Zhou (2013) "Multi-Resolution-Test for Consistent Phenotype Discrimination and Biomarker Discovery in Translational Bioinformatics", in the Journal of Bioinformatics and Computational Biology, doi: 10.1142/S0219720013430105.

  5. H. Cao, X.-L. Li, Y.-K. Woon, and S.-K. Ng(2013) "Integrated Oversampling for Imbalanced Time Series Classification", in the IEEE Transactions on Knowledge and Data Engineering (TKDE), Vol 25:12, pages 2809-2822.

  6. Daniel L.-K. Wong, X.-L. Li, M. Wu, J. Zheng, and S.-K. Ng(2013) "PLW: Probabilistic Local Walks for Detecting Protein Complexes from Protein Interaction Networks", in BMC Genomics (InCoB2013 Conference Supplements), Vol 14 (Suppl 5):S15.

  7. P. Yang, X.-L. Li, J.-P. Mei, C.-K. Kwoh, and S.-K. Ng(2012) "Positive-Unlabeled Learning for Disease Gene Identification", in Bioinformatics, Vol 28(20), pages 2640-2647. PDF

  8. S. Awad, N. Panchy, S.-K. Ng, and J. Chen(2012) "Inferring the Regulatory Interaction Models of Transcription Factors in Transcriptional Regulatory Networks", in Journal of Bioinformatics and Computational Biology, Vol 10:5. PDF

  9. M. Wu, X. Li, C.-K. Kowh, S.-K. Ng and L. Wong (2012) "Discovery of Protein Complexes with Core-Attachment Structures from TAP Data", in Journal of Computational Biology, Vol 19:9, pages 1027-1043. PDF

  10. E. Y. Cheu, C. Quek, and S.-K. Ng (2012) "ARPOP: An Appetitive Reward-based Pseudo-Outer-Product Neural Fuzzy Inference System Inspired from The Operant Conditioning of Feeding Behavior in Aplysia", in IEEE Transactions on Neural Networks, Vol 23:2, pages 317-329.

  11. H. Willy, S.-K. Ng, and W.-K. Sung (2011) "D-SLIMMER: Domain-SLiM Interaction Motifs Miner for Sequence Based Protein-Protein Interaction Data", in Journal of Proteome Research, Vol 10:12, pages 5285-5295, DOI: 10.1021/pr200312e. PDF

  12. P. Yang , X. Li, M. Wu, C.-K. Kwoh, and S.-K. Ng (2011) "Inferring Gene-Phenotype Associations via Global Protein Complex Network Propagation", in PLoS ONE, 6(7): e21502. PDF

  13. S. Teddy and S.-K. Ng (2011) "Forecasting ATM Cash Demands using a Local Learning Model of Cerebellar Associative Memory Network", in International Journal of Forecasting, vol 27:706-776

  14. M. Wu, H. N. Chua, X. Li, C.-K. Kwoh, and S.-K. Ng (2010) "Integrating Diverse Biological and Computational Sources for Reliable Protein-Protein Interactions", in BMC Bioinformatics, 11(Suppl 7):S8. PDF

  15. H. Willy, F. Song, Z. Aung, S.-K. Ng and W.-K. Sung (2010) "SLiM on DIet: Finding Short Linear Motifs on Domain Interaction Interfaces in PDB", in Bioinformatics, 26(8):1036-1042.

  16. X. Li, M. Wu, C.-K. Kwoh, and S.-K. Ng (2010) "Computational approaches for detecting protein complexes from protein interaction networks: a survey", in BMC Genomics 11(Suppl 1):S3. download

  17. F. Eisenhaber, C.-K. Kwoh, S.-K. Ng, W.-K. Sung, and L. Wong (2009) "Brief Overview of Bioinformatics Activities in Singapore", in PLoS Computational Biology 5(9): e1000508. download

  18. D. Low, V. Kuralmani, S.-K. Ng, K. K. Lee, I. Ng, and B. T. Ang (2009) "Prediction of Outcome Utilizing Both Physiological and Biochemical Parameters in Severe Head Injury", in Journal of Neurotrauma vol 26:1177-1182.

  19. M. Wu, X. Li, C.-K. Kwoh, and S.-K. Ng (2009) "A Core-Attachment based Method to Detect Protein Complexes in PPI Networks", in BMC Bioinformatics, vol 10:169.

  20. H.N. Chua, W. Hugo, G. Liu, X. Li, L. Wong and S.-K. Ng (2009) "A probabilistic graph-theoretic approach to integrate multiple predictions for the protein-protein subnetwork prediction challenge", in Annals of the New York Academy of Sciences, Vol 1158:224-33.

  21. S. Tang, Z. Zhang, G. Kavitha, E.-K. Tan, and S.-K. Ng (2009) "MDPD: an integrated genetic information resource for Parkinson's disease", in Nucleic Acids Research, Vol 37(Database issue):D858-62.

  22. X. Li, J.-X. Li, B. Veeravalli, and S.-K. Ng (2008) "Inferring Transcription Factor Interactions Using a Novel HV-SVM Classifier", in International Journal of Computational Biology and Drug Design, Vol 1, No 1, pp 59-73.

  23. Z. Aung, S.-H. Tan, S.-K. Ng and K. L. Tan (2008) "Uncovering the Structural Basis of Protein Interactions with Efficient Clustering of 3-D Interaction Interfaces", in Journal of Bioinformatics and Computational Biology, Vol 6, No 3, pp 415 - 433.

  24. Vincent Y.F. Tan and S.-K. Ng (2008) "Privacy-Preserving Sharing of Horizontally-Distributed Private Data for Constructing Accurate Classifiers" in Privacy, Security, and Trust in KDD , F. Bonchi et al. (Eds.):LNCS 4890, pp. 116-137, 2008.

  25. X. Li, Y.C. Tan, and S.-K. Ng (2006) "Systematic gene function prediction from gene expression data by using a fuzzy nearest-cluster method", BMC Bioinformatics, 7 (Suppl 4): S23.

  26. S.-H. Tan, H. Willy, W.-K. Sung and S.-K. Ng (2006) "A Correlated Motif Approach for Finding Short Linear Motifs from Protein-Protein Interaction Data", BMC Bioinformatics vol 7:502.

  27. J. Jansson, S.-K. Ng, W.-K. Sung, H. Willy (2006) "A Faster and More Space-Efficient Algorithm for Infering Arc-Annotations of RNA Sequences through Alignment", in Algorithmica vol. 46, no. 2, pages 223-245.

  28. S.-K. Ng and S.-H. Tan (2006) "Challenges in Biological Literature Mining for Online Discovery of Molecular Interaction Pathways", International Journal of Computer Applications in Technology (IJCAT), Special Issue on "Data Mining Applications", vol 27, No 4, pages 259-269.

  29. X.-L. Li, S.-H. Tan, and S.-K. Ng (2006) "Improving Domain-Based Protein Interaction Prediction Using Biologically-Significant Negative Dataset", International Journal of Data Mining and Bioinformatics (IJDMB) vol 1, no. 2, pages 138-149.

  30. J. Chen, W. Hsu, M.L. Lee, and S.-K. Ng (2006) "Increasing Confidence of Protein Interactomes using Network Topological Metrics", Bioinformatics vol 22, no. 16, pages 1998-2004. [Supplementary Information]

  31. J.J. Kim, Z. Zhuo, J.C. Park, and S.-K. Ng (2006) "BioContrasts: Extracting and Exploiting Protein-Protein Contrastive Relations from Biomedical Literature", Bioinformatics vol 22, no. 5, pages 597-605. (open advance access)

  32. J. Chen, W. Hsu, M.L. Lee, and S.-K. Ng (2005) "Discovering Reliable Protein Interactions from High-Throughput Experimental Data using Network Topology", Artificial Intelligence in Medicine, vol 35, pages 37-47.

  33. S.-H. Tan, Z. Zhang and S.-K. Ng (2004). "ADVICE: Automated Detection and Validation of Interaction by Co-Evolution", Nucleic Acids Research, vol 32, W69-W72.

  34. Z. Zhang and S.-K. Ng (2004). "InterWeaver: Interaction Reports for Discovering Potential Protein Interaction Partners with Online Evidence", Nucleic Acids Research, vol 32, W73-W75.

  35. S.-K. Ng , S.-H. Tan (2004). "Discovering Protein-Protein Interactions", Journal of Bioinformatics and Computational Biology, Vol. 1, No. 4, pages 711-741.

  36. S.-K. Ng , L. Wong (2004). "Accomplishments and Challenges in Bioinformatics", IEEE IT Professional magazine, vol 6 no 1 (January/February 2004), pages 44-50.

  37. S.-K. Ng, Z. Zhuo, S.-H. Tan, (2003) "Integrative Approach for Computationally Inferring Protein Domain Interactions", Bioinformatics, Vol 19, No. 8, pages 923-929.

  38. S.-K. Ng, Z. Zhuo, S.-H. Tan, K. Lin, (2003) "InterDom: a database of putative interacting protein domains for validating predicted protein interactions and complexes", Nucleic Acids Research, Vol 31, No. 1, pages 251-254.

  39. A. Caprara, G. Lancia, S.-K. Ng, (2001). "Sorting Permutations by Reversals through Branch-and-Price", INFORMS Journal on Computing Vol 13, Issue 3, pages 224-244. (preprint.ps)

  40. A. Caprara, G. Lancia, S.-K. Ng, (1999). "A Column-Generation Based Branch-and-Bound Algorithm for Sorting By Reversals", in M. Farach-Colton, F.S. Roberts, M. Vingron, M. Waterman (eds.) Mathematical Support for Molecular Biology, DIMACS Series in Discrete Mathematics and Theoretical Computer Science 47, AMS Press, 213-226.

  41. S.-K. Ng, Mukhopadhyay, N., Rayman, J., Ghosh, S., and Perlin, M, (1996). "Fully Automated Microsatellite Genotyping: Computer Software and Analysis Results", American Journal of Human Genetics, 59(4):A229.

  42. M. Perlin, G. Lancia and S.-K. Ng, (1995). "Toward Fully Automated Genotyping: Genotyping Microsatellite Markers by Deconvolution", American Journal of Human Genetics, 57(5):1199-1210.

CONFERENCE PAPERS

  1. A. T. Luu, Y. Tay, S. C. Hui, and S.-K. Ng. (2016) "Learning Term Embeddings for Taxonomic Relation Identification Using Dynamic Weighting Neural Network", in Proceedings of the Conference on Empirical Methods in Natural Language Processing (EMNLP), pp. 403-413, Austin, Texas, USA, 2-4 November, 2016.

  2. L. Yu, W. Wu, G. Li, W. S. Ng, S.-K. Ng, X. Li, Z. Huang, A. Anunan, and H. M. Watt. (2015) "iVizTRANS: Interactive Visual Learning for Home and Work Place Detection from Massive Public Transportation Data", in Proceedings of the IEEE Visual Analytics Science and Technology (VAST), Chicago, Illinois, USA, 25-30 October, 2015.

  3. A. T. Luu, J.-J. Kim, and S.-K. Ng. (2015) "Incorporating Trustiness and Collective Synonym/Contrastive Evidence into Taxonomy Construction", in Proceedings of the Conference on Empirical Methods in Natural Language Processing (EMNLP), ), pp. 1013-1022, Lisbon, Portugal, 17-21 September 2015.

  4. S.-K. Ng, W. S. Ng, and Paul M. C. Lim. (2014) "A*DAX: Data Analytics Platform for Smart Cities", Smart City Expo World Congress, Barcelona, Spain, 18-20 November, 2014.

  5. A. T. Luu, J.-J. Kim,and S.-K. Ng. (2014) "Taxonomy Construction Using Syntactic Contextual Evidence", in Proceedings of Conference on Empirical Methods on Natural Language Processing (EMNLP), pp. 810-819, Doha, Qatar, 25-29 October, 2014.

  6. L. Yu, Joanne C. P. Yee, W. S. Ng, Paul M. C. Lim, and S.-K. Ng.(2014) "SINGAPORE-IN-MOTION: More Data Lead to Better Understanding", 21st ITS World Congress, Detroit, USA, 7-11 September 2014.

  7. Paul M. C. Lim, S.-K. Ng, W. S. Ng, H. Wu and Alan M. H. Quek. (2014) "A*DAX for Transport Data Management, Sharing and Analytics", 21st ITS World Congress, Detroit, USA, 7-11 September 2014.

  8. N. Amudha, G. G. Chua, Eric S. K. Foo, S. T. Goh, S. Guo, Paul M. C. Lim, M. T. Mak, M. C. M. Munshi S.-K. Ng, W. S. Ng, and H. Wu. (2014) "A*DAX: A Platform for Cross-domain Data Linking, Sharing and Analyticss", in Proceedings of the 19th International Conference on Database Systems for Advanced Applications (DASFAA), Bali, Indonesia, April 21-24, 2014.

  9. K. Rajasekharan, A. P. Mathur, S.-K. Ng (2013) "Effective Crowdsourcing for Software Feature Ideation in Online Co-Creation Forums", in Proceedings of the 25th International Conference on Software Engineering and Knowledge Engineering (SEKE), Boston, USA, June 27-29, 2013.

  10. W. Ng, S.-K. Ng, and W. Wu (2012) "PlugCloud - Scaling by Plugging a Personal Cloud Infrastructure", in Proceedings of the IEEE International Workshop on Scalable Computing for Big Data Analytics (SC-BDA), Singapore, December 17-19, 2012.

  11. G. Liu, A. Suchitra, H. Zhang, M. Feng, S.-K. Ng, and L. Wong (2012) "AssocExplorer: An Association Rule Visualization System for Exploratory Data Analysis", in Proceedings of the 18th ACM SIGKDD Conference on Knowledge Discovery and Data Mining (KDD 2012), pp 1536-1539 (Demonstration Track), Beijing, China, August 12-16, 2012.

  12. E. Y. Cheu, K. Sim, S.-K. Ng, and H. C. Quek (2012) "Fuzzy Associative Learning of Feature Dependency for Time Series Forecasting", in Proceedings of the 2012 International Joint Conference on Neural Networks (IJCNN 2012), pp 1-7, Brisbane, Australia, June 10-15, 2012.

  13. M.N. Nguyen, X.-L. Li, and S.-K. Ng (2012) "Ensemble Based Positive Unlabeled Learning for Time Series Classification", in Proceedings of the 17th International Conference on Database Systems for Advance Applications (DASFAA 2012), pp 243-257, Busan, Korea, April 15-18, 2012.

  14. H. Cao, X.-L. Li, Y.-K. Woon and S.-K. Ng (2011) "SPO: Structure Preserving Oversampling for Imbalanced Time Series Classification", in Proceedings of the the IEEE International Conference on Data Mining (ICDM 2011), pp 1008-1013, Vancouver, Canada, December 11-14, 2011.

  15. Y. Fang, M. Ashrafi, and S.-K. Ng (2011) "Privacy beyond Single Sensitive Attribute", in Proceedings of the 22nd International Conference on Database and Expert Systems Applications (DEXA-11), pp187-201, Toulouse, France, August 29-September 2, 2011.

  16. W. Wei, C. Gao, X.-L. Li, S.-K. Ng, and G. Li (2011) "Integrating Community Question and Answer Archives", in Proceedings of the 25th AAAI Conference on Artificial Intelligence (AAAI-11), pp1255-1260, San Francisco, USA, August 7-11, 2011.

  17. M. N. Nguyen, X.-L. Li, and S.-K. Ng(2011) "Positive Unlabeled Learning for Time Series Classification", in Proceedings of the the 22nd International Joint Conference on Artificial Intelligence (IJCAI 2011), pp1421-1426, Barcelona, Spain, July 16-22, 2011.

  18. E. Y. Cheu, H. C. Quek, and S.-K. Ng(2011) "Evolving Ensemble of Fuzzy Models", in Proceedings of the 20th IEEE International Conference on Fuzzy Systems (FUZZ-IEEE 2011), pp2668-2675, Taipei, Taiwan, June 27-30, 2011.

  19. X.-L. Li, A. Tan, P.S. Yu, and S.-K. Ng(2011) "ECODE: Event-Based Community Detection from Social Networks", in Proceedings of the 16th International Conference on Database Systems for Advance Applications (DASFAA 2011), pp 22-37, Hong Kong, April 22-25, 2011. BEST PAPER RUNNER-UP AWARD FOR DASFAA 2011.

  20. G. Liu, M. Feng, Y. Wang, L. Wong, S.-K. Ng, T. L. Mah, and E. Lee (2011) "Toward Exploratory Hypothesis Testing and Analysis", in Proceedings of the IEEE International Conference on Data Engineering (ICDE 2011), pp745-756, Hannover, Germany, April 11-16, 2011.

  21. X. L. Li, B. Liu and S.-K. Ng (2010) "Negative Training Data Can Be Harmful to Text Classification", in Proceedings of the Conference on Empirical Methods in Natural Language Processing (EMNLP 2010), pp218-228, Massachusetts, USA, October 9-11, 2010.

  22. E. Y. Cheu, H. C. Quek and S.-K. Ng (2010) "Time Series Forecasting With Appetitive Reward-based Pseudo-Outer-Product Fuzzy Neural Network", in Proceedings of the IEEE Intl Joint Conf on Neural Networks (IJCNN 2010), pp. 4015-4022, Barcelona, Spain, July 18-23, 2010.

  23. X. L. Li, L. Zhang, B. Liu and S.-K. Ng (2010) "Distributional Similarity vs. PU Learning for Entity Set Expansion", in Proceedings of the 48th Annual Meeting of the Association for Computational Linguistics (ACL 2010), pp. 359-364, Uppsala, Sweden, July 11-16, 2010.

  24. Z. Aung and S.-K. Ng (2010) "An Indexing Scheme for Fast and Accurate Chemical Fingerprint Database Searching", in Proceedings of the 22nd Intl Conf on Scientific and Statistical Database Management (SSDBM 2010), pp. 288-205, Heidelberg, Germany, June 30-July 2, 2010.

  25. C. Sheng, W. Hsu, M. L. Lee, J. C. Tong, and S.-K. Ng (2010) "Mining Mutation Chains in Biological Sequences", in Proceedings of the 26th IEEE International Conference on Data Engineering (ICDE 2010), pp. 473-484, Long Beach, California, USA, March 1-6, 2010.

  26. K. Sim, V. Gopalkrishnan, H. N. Chua, and S.-K. Ng (2009) "MACs: Multi-Attribute Co-Clusters with High Correlation Information", in Proceedings of the European Conference on Machine Learning and Principles and Practice of Knowledge Discovery in Databases (ECML/PKDD 2009), pp.398-413, Bled, Slovenia, September 7-11, 2009. [Supplementary Information]

  27. S. D. Teddy and S.-K. Ng (2009) "KCMAC-TSK: A Fuzzy Cerebellar Model with Localized TSK Learning for Non-Linear System Identification", in Proceedings of the 18th IEEE International Conference on Fuzzy Systems (FUZZ-IEEE 2009), pp. 1633-1638, Jeju Island, Korea, August 20-24, 2009.

  28. E. Y. Cheu, S.-K. Ng and H.C. Quek (2009) "A Hypothalamic and Piagetian Fuzzy Inference System: HtPFIS", in Proceedings of the 18th IEEE International Conference on Fuzzy Systems (FUZZ-IEEE 2009), pp. 1-6, Jeju Island, Korea, August 20-24, 2009.

  29. M. Ashrafi and S.-K. Ng (2009) "Collusion-Resistant Anonymous Data Collection Method", in Proceedings of the 15th ACM SIGKDD Conference on Knowledge Discovery and Data Mining (KDD-09), pp69-77, Paris, France, June 28-July 1, 2009.

  30. E. Y. Cheu, S.-K. Ng and H.C. Quek (2009) "An Interval Type-2 Neural Fuzzy Inference System based on Piaget's Action-Cognitive Paradigm", in Proceedings of the IEEE Congress on Evolutionary Computation (CEC 2009), pp925-932, Trondheim, Norway, May 18-21, 2009.

  31. X.-L. Li, P. S. Yu, B. Liu and S.-K. Ng (2009) "Positive Unlabeled Learning for Data Stream Classification", in Proceedings of the 2009 SIAM International Conference on Data Mining (SDM09), pp257-268, Nevada, USA, April 30-May 2, 2009.

  32. M. Asharfi and S.-K. Ng (2009) "Efficient and Anonymous Online Data Collection", in Proceedings of the 14th International Conference on Database Systems for Advance Applications (DASFAA 2009), pp471-485, Brisbane, Australia, April 21-23, 2009.

  33. X.-L. Li, C.-S. Foo,K.L. Tew and S.-K. Ng (2009) "Searching for Rising Stars in Bibliography Networks ", in Proceedings of the 14th International Conference on Database Systems for Advance Applications (DASFAA 2009), pp. 288-292, Brisbane, Australia, April 21-23, 2009.

  34. H.N. Chua, K.L. Tew, X.-L. Li, and S.-K. Ng (2008) "A Unified Scoring Scheme for Detecting Essential Proteins in Protein Interaction Networks", in Proceedings of the IEEE Intl Conference on Tools with Artificial Intelligence (ICTAI 2008), vol.2, pp. 66-74, Ohio, USA, November 3-5, 2008.

  35. E.Y. Cheu, H.C. Quek, and S.-K. Ng (2008) "TNFIS: Tree-Based Neural Fuzzy Inference System", in Proceedings for the IEEE Intl Joint Conf on Neural Networks (IJCNN 2008), pp.398-405, Hong Kong, June 1-6, 2008.

  36. M. Asharfi and S.-K. Ng (2008) "Enabling Privacy-Preserving E-Payment Processing", in Proceedings of the 13th International Conference on Database Systems for Advance Applications (DASFAA 2008), LNCS 4947, pp. 596-603, New Delhi, India, March 19-21, 2008.

  37. X.-L. Li, J. Lee, B. Veeravalli, and S.-K. Ng (2007) "An HV-SVM Classifier to Infer TF-TF Interactions using Protein Domains and GO Annotations", in Proceedings of the IEEE 7th International Symposium on Bioinformatics and Bioengineering (BIBE 2007), pp1360-1364, Boston, USA, October 14-17, 2007.

  38. X.-L. Li, B. Liu, and S.-K. Ng (2007) "Learning to Classify Documents with Only a Small Positive Training Set", in Proceedings of the 18th European Conference on Machine Learning (ECML 2007), pp201-213, Warsaw, Poland, September 17-21, 2007.

  39. X.-L. Li, C.-S. Foo, and S.-K. Ng (2007) "Discovering Protein Complexes in Dense Reliable Neighborhoods of Protein Interaction Networks", in Proceedings of the 6th International Conference on Computational Systems Bioinformatics (CSB 2007), pp157-168, San Diego, California, August 13-17, 2007.

  40. Z. Aung, S.-H. Tan, S.-K. Ng and K. L. Tan (2007) "Uncovering the Structural Basis of Protein Interactions with Efficient Clustering of 3-D Interaction Interfaces", in Proceedings of the 6th International Conference on Computational Systems Bioinformatics (CSB 2007), pp 287-297, San Diego, California, August 13-17, 2007.

  41. Vincent Y. F. Tan and S.-K. Ng (2007) "Privacy-Preserving Sharing of Horizontally-Distributed Private Data for Constructing Accurate Classifiers", in Proceedings of the First ACM SIGKDD International Workshop on Privacy, Security, and Trust in KDD (PinKDD 2007), pp 18-27, San Jose, California, August 12-15, 2007.

  42. Vincent Y. F. Tan and S.-K. Ng (2007) "Generic Probability Density Function Reconstruction for Randomization in Privacy-Preserving Data Mining", In: P. Perner (Ed.): Proceedings of the 5th International Conference on Machine Learning and Data Mining (MLDM-07), (LNAI 4571) , pp. 76-90, Leipzig, Germany, July 18-20, 2007.

  43. J. Chen, W. Hsu, M.L. Lee, and S.-K. Ng (2007) "Labeling Network Motifs in Protein Interactomes for Protein Function Prediction", in Proceedings of the 23rd International Conference on Data Engineering (ICDE 2007), pp 546-555, Istanbul, Turkey, April 16-20, 2007.

  44. X. -L. Li, B. Liu, and S.-K. Ng (2007) "Learning to Identify Unexpected Instances in the Test Set", in Proceedings of the Twentieth International Joint Conference on Artificial Intelligence (IJCAI-07) , pp2802-2807, Hyderabad, India, January 6-12, 2007.

  45. J. Chen, H.N. Chua, W. Hsu, M.L. Lee, S.-K. Ng, R. Saito, W.-K. Sung, L. Wong (2006) "Increasing Confidence of Protein-Protein Interactomes", Genome Informatics 17(2): 284-297. also presented as keynote address at the 17th International Conference on Genome Informatics (GIW-2006), Yokohama, Japan, December 18-20, 2006.

  46. J. Chen, W. Hsu, M.L. Lee, and S.-K. Ng (2006) "NeMoFinder: Dissecting genome wide protein-protein interactions with repeated and unique network motifs", in Proceedings of the Twelfth ACM SIGKDD International Conference on Knowledge Discovery and Data Mining (KDD 2006), pp 106-115, Philadelphia, USA, August 20-23, 2006.

  47. Z. Zhang, M. Veronika, S.-K. Ng, and V.B. Bajic (2006) "Intelligent Extraction versus Advanced Query: Recognize Transcription Factors from Databases", in Proceedings of the International Workshop on Pattern Recognition in Bioinformatics (PRIB 2006), pp 133-139, Hong Kong, 20 August, 2006.

  48. X. Li, Y.C. Tan, and S.-K. Ng (2006) "Systematic Gene Function Prediction Using a Fuzzy Nearest-Cluster Method on Gene Expression Data", in Proceedings of the Symposium of Computations in Bioinformatics and Bioscience, Vol. 1, pp 171-178, Hangzhou, China, 20-24 June, 2006.

  49. X.-L. Li, S.-H. Tan, C.-S. Foo, and S.-K. Ng (2005) "Interaction Graph Mining for Protein Complexes Using Local Clique Merging", in Genome Informatics, vol 16(2), pages 260-269; also presented at the 16th International Conference on Genome Informatics (GIW-2005), Yokohama, Japan, December 19-21, 2005. BEST PAPER AWARD FOR GIW-2005.

  50. X.-L. Li, S.-H. Tan, and S.-K. Ng (2005) "Exploring Cross-Function Domain Interaction Map", in Proceedings of the 2005 International Joint Conference of InCoB, AASBi and KSBI (BIOINFO 2005), Busan, Korea, September 22-24, 2005, pages 431-436.

  51. S.-K. Ng (2005) "Smart Bio-Laboratories of the Future", in Proceedings of the IEEE International Symposium on Circuits and Systems (ISCAS2005), Kobe, Japan, May 23-26, 2005, pages 4779-4782.

  52. W.-K. For, S.-K. Ng, X. Bao, and W.-S. Gan, (2005) "Relative Proximity Estimation in a Confined Small-Scale Environment", in Proceedings for the the 2005 International Workshop on Wireless Ad-Hoc Networks, London, UK, May 23-26, 2005.

  53. X. Bao, S.-K. Ng, E.-H. Chua, W.-K. For (2005) "Virtual Lab Dashboard: Ubiquitous Monitoring and Control in a Smart Bio-Laboratory", in Proceedings of the International Conference on Computational Science and Its Applications (ICCSA-2005), Springer-Verlag Lecture Notes in Computer Science, Volume 3481, Apr 2005, Pages 1167 - 1176.

  54. X-L. Li, S.-H. Tan, S.-K. Ng (2005) "Protein Interaction Prediction using Inferred Domain Interactions and Biologically-Significant Negative Dataset", in Proceedings of the International Conference on Computational Science and Its Applications (ICCSA-2005), Springer-Verlag Lecture Notes in Computer Science, Volume 3482, Apr 2005, Pages 318 - 326.

  55. W.-K. For, X. Bao, W.-S. Gan, S.-K. Ng (2005) "Reconfigurable Context-Sensitive Bio-Bridge Middleware for Smart Bio-Laboratories", in Proceedings of the 19th International Conference on Advanced Information Networking and Applications (AINA2005), 28-30 March 2005, Vol 2, pages 561-566.

  56. W.-K. For, X. Bao, W.-S. Gan, S.-K. Ng (2005) "Location Awareness for On-the-Go Equipment Access in a Smart Bio-Laboratory", in Proceedings of the 2nd International Conference on Wireless and Optical Communications Networks (WOCN2005), 6-8 March 2005.

  57. Z. Zhuo, S. Tang, S.-K. Ng (2005) "Toward Discovering Disease-Specific Gene Networks", in Proceedings of the 3rd Asia-Pacific Bioinformatics Conference (APBC-2005), Singapore, 17-21 January, pages 161-170.

  58. J. Chen, W. Hsu, M.L. Lee, S.-K. Ng (2004) "Systematic Assessment of High-Throughput Experimental Data for Reliable Protein Interactions using Network Topology", in Proceedings of the 16th IEEE International Conference on Tools with Artificial Intelligence (ICTAI 2004), November 15-17, Florida, pages 368-372.

  59. J. Jansson, S.-K. Ng, W.-K. Sung, H. Willy (2004) "A Faster and More Space-Efficient Algorithm for Inferring Arc-Annotations for RNA Sequences through Alignment", in Proceedings of the 4th Workshop on Algorithgms in Bioinformatics (WABI 2004), September 14-17, Bergen, Norway, pages 302-313.

  60. S.-H. Tan, W.-K. Sung and S.-K. Ng (2004). "An Automated Approach for Protein Motif Discovery Using Interaction-Driven Motif Mining", in Proceedings of the 2nd International Conference on Computer Science and Its Applications (ICCSA-2004), June 28-30, San Diego, pages 224-232.

  61. S.-H. Tan, W.-K. Sung, S.-K. Ng (2004). "Discovering Novel Interacting Motif Pairs from Large Protein-Protein Interaction Datasets", in Proceedings of the 4th IEEE Symposium of Bioinformatics and Bioengineering (BIBE2004), pages 568-575, May 19-21 2004.

  62. S.-K. Ng, Z. Zhu, Y. S. Ong (2004). "Whole-Genome Functional Classification of Genes by Latent Semantic Analysis on Microarray Data". in Proceedings of the 2nd Asia-Pacific Bioinformatics Conference (APBC 2004), pages 123-129, January 18-22 2004.

  63. H. Li, J. Li, S.-H. Tan, S.-K. Ng (2004). "Discovery of Binding Motif Pairs from Protein Complex Structural Data and Protein Interaction Sequence Data", in the Proceedings of the 9th Pacific Symposium for Biocomputing (PSB 2004), pages 312-323, January 6-10 2004.

  64. S.-K. Ng, S. H. Tan, V. S. Sundarajan (2003). "On Combining Multiple Microarray Studies for Improved Functional Classification by Whole-Dataset Feature Selection", in Genome Informatics Vol 14, pages 44-53; also presented at 14th International Conference on Genome Informatics (GIW 2003), December 14-17, 2003.

  65. J. Li, H. Liu, S.-K. Ng, L. Wong (2003) "Discovery of Significant Rules for Classifying Cancer Diagnosis Data", in Bioinformatics, Vol 19, suppl. 2, pages ii93-ii102; also presented at European Conference for Computational Biology (ECCB 2003) , September 27-30, 2003.

  66. S.-K. Ng, Z. Zhuo, S.-H. Tan, (2003) "Integrative Approach for Computationally Inferring Protein Domain Interactions", in Proceedings of the 18th ACM Symposium for Applied Computing (SAC2003), pages 115-121, March 2003.

  67. V. Bajic, V. Brusic, J. Li, S.-K. Ng, L. Wong (2003) "From Informatics to Bioinformatics", in Proceedings of the 1st Asia Pacific Bioinformatics Conference, pages 3-14 (invited keynote, primary author L. Wong).

  68. J. Li, S.-K. Ng, L. Wong, (2003) "Bioinformatics adventures in database research", in Proc. 9th Int. Conf. on Database Theory (ICDT2003), pages 31-46, Siena, Italy, January 2003. (invited keynote, primary author L. Wong)

  69. A. Caprara, G. Lancia, S.-K. Ng, (2000). "Fast Practical Solution of Sorting by Reversals", in Proceedings of the Eleventh Annual ACM-SIAM Symposium on Discrete Algorithms (SODA'00), ACM Press, pages 12-21.

  70. S.-K. Ng and M. Wong, (1999). "Toward Routine Automatic Pathway Discovery from On-Line Scientific Text Abstracts", Genome Informatics Vol 10:104-112; also presented at 10th International Conference on Genome Informatics (GIW 2003), December 14-15, 1999 .

  71. S.-K. Ng and A.-T. Aw, (1992). "CATS - A Domain-specific Statistical Text-extraction System", in Proceedings of 1st International Conference on Intelligent Systems (SPICIS), 122-128.

  72. S.-K. Ng and M. Tomita, (1991). "Probabilistic LR Parsing for General Context-free Grammars", in Proceedings of 2nd International Workshop on Parsing Technologies by SIGPARSE ACL, 154-163.

PATENTS

  1. S.-K. Ng and L. Wong (2008) "Protein Interaction Extraction System", Singapore Patent No. 200203424-7, granted on 30 June 2008.

  2. M. Ashrafi and S.-K. Ng (2009) "A Method and System for Sharing Data", WO Patent, WO/2009/145,734.

         

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