PADA is a Java implantation of the algorithm to approximate ODE-based biological pathway dynamics using a dynamic Bayesian network. It supports the import of pathway modes in the System Biology Mark-up Language (SBML) format and can be run on multiple platforms such as Windows, Linux and Mac.
    It is distributed under GPL.
  • Bing Liu, P.S. Thiagarajan, David Hsu. Probabilistic Approximations of Signaling Pathway Dynamics. In Proc. of the 7th Computational Methods in Systems Biology (CMSB 2009) , 2009.
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    This software is provided in the hope that it will be useful, but without any warranty, without even the implied warranty of merchantability or fitness for a particular purpose. In no event shall the authors be liable for any special, indirect or consequential damages or any damages whatsoever resulting from loss of use, data, or profits, whether in an action of contract, negligence or other tortuous action, arising out of or in connection with the use or performance of this software.