CR                      This is the CR colorectal cancer data to be
                        included in my package
RC                      This is the RC renal cancer data to be included
                        in my package
RCC                     This is the RCC renal cancer control data to be
                        included in my package
essnet                  Based on the output of internal_substraction,
                        this calculates a p-value for each complex
fsnet                   Based on the rank weight matrix and the list of
                        complexes, give a matrix of scores per complex
generate_proteomics_sim
                        Proteomics data simulation function
generate_rank_matrix    Generates a rank matrix
generate_weight_matrix
                        Generates a weight matrix by applying the
                        generate weight vector function to all columns
generate_weight_vector
                        Generates a weight vector
gsea                    The original GSEA algorithm based on the
                        Kolmogorov-Smirnov
he                      The hypergeometric enrichment pipeline
hello                   Hello, World!
internal_substraction   This generates all paired differences, deltas,
                        for each gene between samples in class A and B
my.t.test.p.value       A test function for the t-test
pfsnet_theoretical_t_test
                        Uses the original FSNET matrix but applies
                        PFSNET's calculation method
ppfsnet_theoretical_t_test
                        Uses the original FSNET matrix but applies
                        PPFSNET's calculation method
qpsp                    QPSP rank matrix generation function
qpsp_generate_rank_matrix
                        QPSP rank matrix generation function
qpsp_standard_t_test    This generates a vector of p-values for a data
                        matrix using the two-sample t-test
snet_generate_weight_matrix
                        Generates a matrix of snet weights for a given
                        data matrix
snet_weight_vector      Generates a vector of snet weights for a given
                        sample
standard_t_test         This generates a vector of p-values for a data
                        matrix using the two-sample t-test
subset_weights          Generates a modulated weight matrix
