See-Kiong Ng, Hiroshi Mamitsuka, and Limsoon Wong, editors.
Genome Informatics 2007.
Imperial College Press, London, December 2007.
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Contents
- See-Kiong Ng, Hiroshi Mamitsuka, Limsoon Wong.
Preface, pages ix-xv.
Full Papers
- M. Arita, T. Takimatsu.
Detection of Monosaccharide Types from Coordinates,
pages 3-14.
- Z. Aung, J. Li.
Mining Super-Secondary Structure Motifs from 3D Protein
Structures: A Sequence Order Independent Approach,
pages 15-26.
- X. Gao, D. Bu, S. C. Li, J. Xu, M. Li.
FragQA: Predicting Local Fragment Quality of
a Sequence-Structure Alignment, pages 27-39.
- J. Huang, W. Honda, M. Kanehisa.
Predicting B Cell Epitope Residues with Network
Topology Based Amino Acid Indices, pages 40-49.
- S. Kawashima, T. Kawashima, N. H. Putnam, D. S. Rokhsar,
H. Wada, M. Kanehisa.
Comparative Pair-Wise Domain-Combinations for Screening the Clade
Specific Domain Architectures in Metazoan Genomes,
pages 50-60.
- U. Keich, P. Ng.
A Conservative Parametric Approach to Motif Significance Analysis,
pages 61-72.
- C. H. Koh, L. Wong.
Recognition of Polyadenylation Sites from Arabidopsis Genomic Sequences,
pages 73-82.
- V. Kuznetsov, Y. L. Orlov, C. L. Wei, Y. Ruan.
Computational Analysis and Modeling of Genome-Scale Avidity Distribution
of Transcription Factor Binding Sites in ChIP-PET Experiments,
pages 83-94.
- L. Liu, T. Jiang.
Linear-Time Reconstruction of Zero-Recombinant Mendelian Inheritance
on Pedigrees without Mating Loops,
pages 95-106.
- L. F. Murga, Y. Wei, M. J. Ondrechen.
Computed Protonation Properties: Unique Capabilities for Protein Functional
Site Prediction, pages 107-118.
- K. Ning, H. K. Ng, H. W. Leong.
An Accurate and Efficient Algorithm for Peptide and PTM Identification
by Tandem Mass Spectrometry, pages 119-130.
- J. M. Peregrin-Alvarez, C. Ouzounis.
The Comparative Genomics of Protein Interactions, pages 131-141.
- T. Shimamura, S. Imoto, R. Yamaguchi, S. Miyano.
Weighted Lasso in Graphical Gaussian Modeling of Large Gene Network
Estimation Based on Microarray Data, pages 142-153.
- Y. Takenaka, A. Matsumoto, H. Matsuda.
GO Based Tissue Specific Functions of Mouse using Countablr Gene
Expression Profiles, pages 154-165.
- K. L. Tew, X. L. Li, S. H. Tan.
Functional Centrality: Detecting Lethality of Proteins in Protein
interaction Networks, pages 166-177.
- M. Towsey, J. M. Hogan, S. Mathews, P. Timms.
The in silico Prediction of Promoters in Bacterial Genomes,
pages 178-190.
Keynote Papers
- F. Eisenhaber.
Discovering Biomolecular Mechanisms with Protein Sequence Studies:
The Annotator Software Suite, pages 193.
- D. Lane.
The p53 Pathway, pages 194.
- H. Margalit.
Regulation of Gene Expression by Small Non-Coding RNAs, pages 195.
- L. W. Stanton.
Mapping the Transcriptional Network in Stem Cells Regulated by REST,
pages 196.
- M. Zhang.
computational Dissection of Mammalian Regulation Networks, pages 197.
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