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Resources for Medical Image Analysis and Surgical Simulation

Visualization Tools
	Sante DICOM viewer: DICOM image viewer
	DicomWorks: DICOM image viewer
	ezDicom: DICOM image viewer
	3D Slicer: volume rendering
	3D Doctor: segmentation, volume rendering
	MeshLab: 3D model viewer
	VTK: The Visualization Toolkit for visualizing 2D and 3D images and models VTKEdge: Advanced visualization with GPU acceleration
	Qt: Cross-platform application and UI framework

Segmentation and Registration Toolkits
	ITK: Insight Segmentation and Registration Toolkit (C++) ITK-Snap: Level set segmentation
	GVF Snake (Matlab)
	FSL: FMRIB Software Library for FMRI, MRI, DTI (Linux, C/C++)
	SPM: Statistical Parametric Mapping (Matlab) VBM: Voxel-based Morphometry (Matlab)
	MedInria: Toolkit for MRI, DTI (C/C++)
	FLIRT: Fast and flexible image registration toolbox

3D Modeling Toolkits
	VGL: C++ algorithms for computation with points, curves and elementary objects
	CGAL: computational geometry algorithms library
	OpenMesh: computational geometry data structure and algorithms

Numerical Software / Libraries
	Numerical Recipes: C/C++ libraries for numerical algorithms
	GSL: GNU Scientific Library for numerical algorithms (C/C++)
	VXL: C++ Libraries for Computer Vision Research and Implementation VNL: C++ algorithms for matrices, vectors, decompositions, optimisers
	TAUCS: C library for efficient sparse linear solvers
	Netlib: FORTRAN mathematical software, papers, and databases

Development Tools
	CMake: Cross-platform, open-source build system
	GCC: GNU Compiler Collection

Last update: 3 Feb 2012